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And i want to purpose a package organization:

org.openwar.core - core things : Game class etc
org.openwar.logic(or model) - classes that model the game,level,units, building ( logic stuff )
org.openwar.graphics -  Tile , Sprite , Resource Manager
org.openwar.graphics.geom - Mesh,Vector etc   
org.openwar.graphics.particle - Particle engine   
org.openwar.graphics.renderer- Renderer class
org.openwar.graphics.renderer.jogl- JOGL Renderer
org.openwar.graphics.renderer.java2D -Java2D renderer
org.openwar.input -  Input Manager
org.openwar.input.jinput -  Jinput implementation
org.openwar.sound- sound
org.openwar.sound.joal- OpenAL implementation
org.openwar.ai- AI stuf

This is for the moment . i think in the future it will evolve

[org.openwar.core - core things : Game class etc]

here's what i would make it
org.openwar.core - core things : Game class etc
org.openwar.game2d
org.openwar.logic(or model) - classes that model the game,level,units, building ( logic stuff )
this depends on the game, for example for the rpg it would be org.openwar.rpg
org.openwar.graphics -  Tile , Sprite , Resource Manager
org.openwar.game2d.graphics
org.openwar.graphics.geom - Mesh,Vector etc
org.openwar.game2d.geom (geometry doesn't apply to just graphics)
org.openwar.graphics.particle - Particle engine
org.openwar.game2d.particles (what it is now)
org.openwar.graphics.renderer- Renderer class
could just fit in with org.openwar.game2d.graphics
org.openwar.graphics.renderer.jogl- JOGL Renderer
org.openwar.graphics.renderer.java2D -Java2D renderer
org.openwar.game2d.graphics.jogl
org.openwar.game2d.graphics.j2d
etc.
org.openwar.input -  Input Manager
org.openwar.input.jinput -  Jinput implementation
org.openwar.sound- sound
org.openwar.sound.joal- OpenAL implementation
ok, except add game2d after openwar
org.openwar.ai- AI stuf
the engine won't provide ai, that's up to the game

Good.

So the goal of the project game2D is to create a game engine for 2d RTS  games?

no, a generic 2d game engine
perhaps you should read some more of the older topics on this site, it has all that information

ok

http://www.openwarengine.org/wiki/index.php/Victory_Engine_Packages